Conducting research for a changing society: This is what drives us at Forschungszentrum Jülich. As a member of the Helmholtz Association, we aim to tackle the grand societal challenges of our time and conduct research into the possibilities of a digitized society, a climate-friendly energy system, and a resource-efficient economy. Work together with around 7,600 employees in one of Europe’s biggest research centers and help us to shape change!
The Bioinformatics Division of the Institute of Biological and Geosciences (IBG-4) processes and develops methods and algorithms to achieve a fundamental understanding of high-dimensional data and processes in the bioeconomy in particular. Bioinformatics at Forschungszentrum Jülich plays a leading role at the international level, for example in the field of plant and microbial data management, in the evaluation of new methods of genome analysis, in the integration, interpretation, and visualization of high-dimensional omics data from the field of bioeconomics, and in the modeling, simulation, and engineering of biomolecular systems, including enzymes. Apply your data science skills to real-world challenges! At the Helmholtz School for Data Science in Life, Earth and Energy (HDS-LEE), we train the next generation of data scientists to tackle key global issues in domain sciences, such as life, earth, or energy. Learn more at www.hds-lee.de.
We offer a
PhD Position - Co-Regulation Structures for Large-Scale Single-Cell Transcriptomics - within the HDS-LEE Graduate School
The Bioinformatics Division of the Institute of Biological and Geosciences (IBG-4) processes and develops methods and algorithms to achieve a fundamental understanding of high-dimensional data and processes in the bioeconomy in particular. Bioinformatics at Forschungszentrum Jülich plays a leading role at the international level, for example in the field of plant and microbial data management, in the evaluation of new methods of genome analysis, in the integration, interpretation, and visualization of high-dimensional omics data from the field of bioeconomics, and in the modeling, simulation, and engineering of biomolecular systems, including enzymes. Apply your data science skills to real-world challenges! At the Helmholtz School for Data Science in Life, Earth and Energy (HDS-LEE), we train the next generation of data scientists to tackle key global issues in domain sciences, such as life, earth, or energy. Learn more at www.hds-lee.de.
We offer a
PhD Position - Co-Regulation Structures for Large-Scale Single-Cell Transcriptomics - within the HDS-LEE Graduate School
PhD Position – Co-Regulation Structures for Large-Scale Single-Cell Transcriptomics
Activities and responsibilities
- Developing methods and workflows to construct robust co-regulation networks from large single-cell and spatial transcriptomics datasets
- Integrating ontologies and metadata (e.g., tissue, cell type, developmental stage, treatment) to build tissue- and context-specific co-regulation networks
- Designing and implementing clustering and integration approaches (e.g., network-based and subspace clustering)
- Using co-regulation networks for gene function and protein-protein functional relationship prediction (guilt-by-association) and benchmarking them against existing bulk co-expression resources
- Comparing and optimizing the developed methods on real biological datasets; working closely with experimental partners for interpretation and validation of results
- Contributing to the integration of the developed methods into open-source software tools and data portals of the institute
- Collaborating with internal and external, as well as national and international, project partners
- Presenting your results at national and international conferences
- Preparing scientific publications and project reports
Qualification profile
- Genuine interest in data science and one or more of its application domains: life and medical sciences, earth sciences, energy systems, or material sciences
- A master’s degree with a strong academic background in mathematics, computer science, physics, material science, earth science, life science, engineering, or a related field
- Proficiency in at least one programming language (Python, R, C++, Julia, etc)
- Good analytical skills with a sound understanding of data evaluation
- Prior experience with single-cell data analysis, network analysis, or machine learning is a plus
- Good organisational skills and ability to work both independently and collaboratively
- Effective communication skills and an interest in contributing to a highly international and interdisciplinary team
- Motivation for academic development, supported by bachelor’s and master’s transcripts and two reference letters
- Working proficiency in English for daily communication and professional contexts (TOEFL or equivalent or exemption required)
- Knowledge of German is beneficial
We offer
We work on the very latest issues that impact our society and are offering you the chance to actively help in shaping the change! This HDS-LEE PhD position will be located at Forschungszentrum Jülich, HHU Düsseldorf and Aarhus. We offer ideal conditions for you to complete your doctoral degree:
Further information on doctoral degrees at Forschungszentrum Jülich (including its various branch offices) is available at https://www.fz-juelich.de/en/careers/phd.
We welcome applications from people with diverse backgrounds, e.g., in terms of age, gender, disability, sexual orientation / identity, and social, ethnic, and religious origin. A diverse and inclusive working environment with equal opportunities, in which everyone can realize their potential, is important to us.
Further information on diversity and equal opportunities can be found at https://go.fzj.de/equality and on specific support options at https://www.fz-juelich.de/en/careers/womens-job-journey
We look forward to receiving your application. The job will be advertised until the position has been successfully filled. You should therefore submit your application as soon as possible via our Online Recruitment System: https://www.fz-juelich.de/de/karriere/stellenangebote/2025D-180?apply#
- Outstanding scientific and technical infrastructure
- Cutting Edge data are available for analysis
- Highly motivated groups as well as an international and interdisciplinary working environment at one of Europe’s largest research establishments
- Continuous scientific mentoring by your scientific advisors
- Chance of participating in (international) conferences
- Unique HDS-LEE graduate school program (including data science courses, soft skill courses, and annual retreats): https://www.hds-lee.de/about/#
- Qualification that is highly welcome in industry
- Further development of your personal strengths, e.g., via a comprehensive further training program, a structured program of continuing education, and networking opportunities specifically for doctoral researchers via JuDocS, the Jülich Center for Doctoral Researchers and Supervisors: anzeigenvorschau.net/bestmedia/img/1276579/2370162/Cl/a12fb2965b4f1cc303d38823bd86bfd993129bc0/L4886834/JeyJvbGRsaW5rIjoiaHR0cHM6Ly93d3cuZnotanVlbGljaC5kZS9qdWRvY3MiLCJ6bCI6Ik9ubGluZS1Lb21iaSJ9#232560c59372b598edda677207b9ade3hKn6xM6dmh
- 30 Days of annual leave and flexible working arrangements, including partial remote work
- Targeted services for international employees, e.g., through our International Advisory Service
Further information on doctoral degrees at Forschungszentrum Jülich (including its various branch offices) is available at https://www.fz-juelich.de/en/careers/phd.
We welcome applications from people with diverse backgrounds, e.g., in terms of age, gender, disability, sexual orientation / identity, and social, ethnic, and religious origin. A diverse and inclusive working environment with equal opportunities, in which everyone can realize their potential, is important to us.
Further information on diversity and equal opportunities can be found at https://go.fzj.de/equality and on specific support options at https://www.fz-juelich.de/en/careers/womens-job-journey
We look forward to receiving your application. The job will be advertised until the position has been successfully filled. You should therefore submit your application as soon as possible via our Online Recruitment System: https://www.fz-juelich.de/de/karriere/stellenangebote/2025D-180?apply#
If your questions have not yet been answered via our FAQs: https://www.fz-juelich.de/en/careers/application-information/faq#, please send us a message via our contact form: https://www.fz-juelich.de/de/karriere/stellenangebote/2025D-180?contact#
Please note that for technical reasons we cannot accept applications by e-mail.
www.fz-juelich.de
WE HAVE BEEN AWARDED
Please note that for technical reasons we cannot accept applications by e-mail.
www.fz-juelich.de
WE HAVE BEEN AWARDED
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